Introduction to Bonsai (Module I)

Modern behavioral neuroscience experiments require us to synchronize multiple data streams, precisely deliver stimuli, and – quite often – to do everything in a closed-loop setting. The fact that different devices use different software doesn’t make this task easier.

One of the best – and open – solutions to those challenges is Bonsai, a reactive programming language that allows you to collect data from multiple systems, from calcium imaging, through sound recordings to sensors and control output devices – such as feeders, motors, or stimulus delivery systems. It is easy to learn and implement and robust.

In the first part of our 3-module online course, we will introduce you to the basics of Bonsai – its logic and potential applications. You will also learn how to track animals during experiments, detect their presence in ROIs, run closed-loop paradigms and perform basic logical operations.

Reuirements: we do not require any previous knowledge of programming. Windows operating system and a webcam are necessary.

The workshop fee is EUR 10, but we offer fee waivers in case of need.

Contact us at openlab@nencki.edu.pl in case of any questions!

Instructor: Mateusz Kostecki, Heidelberg University